2022-04-13 16:34:38 +02:00 | | | from typing import List
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2022-03-20 10:09:33 +01:00 | | |
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| | | import numpy as np
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| | | import pandas as pd
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| | |
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| | | from sklearn.model_selection import train_test_split
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| | | from sklearn import metrics
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| | | from sklearn.model_selection import ParameterGrid
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| | | from sklearn.preprocessing import StandardScaler
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| | | from sklearn.metrics import precision_score
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| | | from sklearn.metrics import recall_score
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| | | from sklearn.metrics import f1_score
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| | |
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| | | from sklearn.linear_model import LogisticRegression, SGDClassifier
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| | | from sklearn.svm import SVC
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| | |
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| | | import lightgbm as lgbm
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| | |
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2023-05-14 14:13:53 +02:00 | | | import tensorflow as tf
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| | | from tensorflow import keras
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| | | from keras.optimizers import *
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2022-04-15 15:27:30 +02:00 | | | from keras.models import Sequential
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2022-03-20 10:09:33 +01:00 | | | from keras.layers import Dense, Dropout
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2022-04-15 15:27:30 +02:00 | | | from keras.regularizers import *
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2022-03-20 10:09:33 +01:00 | | | from keras.callbacks import *
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| | |
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| | | #
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| | | # GB
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| | | #
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_predict_gb(df_X, df_y, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return its predictions for the test data.
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| | | """
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2022-04-15 15:27:30 +02:00 | | | model_pair = train_gb(df_X, df_y, model_config)
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2022-08-05 20:24:42 +02:00 | | | y_test_hat = predict_gb(model_pair, df_X_test, model_config)
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2022-03-20 10:09:33 +01:00 | | | return y_test_hat
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| | |
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_gb(df_X, df_y, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return this model (and scaler if any).
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| | | """
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2022-04-15 15:27:30 +02:00 | | | #
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| | | # Double column set if required
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| | | #
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| | | shifts = model_config.get("train", {}).get("shifts", None)
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| | | if shifts:
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| | | max_shift = max(shifts)
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| | | df_X = double_columns(df_X, shifts)
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| | | df_X = df_X.iloc[max_shift:]
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| | | df_y = df_y.iloc[max_shift:]
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2022-03-20 10:09:33 +01:00 | | |
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| | | #
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2022-04-15 15:27:30 +02:00 | | | # Scale
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2022-03-20 10:09:33 +01:00 | | | #
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2022-04-15 15:27:30 +02:00 | | | is_scale = model_config.get("train", {}).get("is_scale", False)
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2022-03-20 10:09:33 +01:00 | | | if is_scale:
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| | | scaler = StandardScaler()
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| | | scaler.fit(df_X)
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| | | X_train = scaler.transform(df_X)
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| | | else:
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| | | scaler = None
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| | | X_train = df_X.values
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| | |
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| | | y_train = df_y.values
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| | |
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| | | #
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| | | # Create model
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| | | #
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2022-04-15 15:27:30 +02:00 | | | params = model_config.get("params")
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2022-03-20 10:09:33 +01:00 | | |
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| | | objective = params.get("objective")
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| | |
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| | | max_depth = params.get("max_depth")
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| | | learning_rate = params.get("learning_rate")
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| | | num_boost_round = params.get("num_boost_round")
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| | |
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| | | lambda_l1 = params.get("lambda_l1")
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| | | lambda_l2 = params.get("lambda_l2")
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| | |
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| | | lgbm_params = {
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| | | 'learning_rate': learning_rate,
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| | | 'max_depth': max_depth, # Can be -1
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| | | #"n_estimators": 10000,
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| | |
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| | | #"min_split_gain": params['min_split_gain'],
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| | | "min_data_in_leaf": int(0.01*len(df_X)), # Best: ~0.02 * len() - 2% of size
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| | | #'subsample': 0.8,
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| | | #'colsample_bytree': 0.8,
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| | | 'num_leaves': 32, # or (2 * 2**max_depth)
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| | | #"bagging_freq": 5,
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| | | #"bagging_fraction": 0.4,
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| | | #"feature_fraction": 0.05,
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| | |
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| | | # gamma=0.1 ???
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| | | "lambda_l1": lambda_l1,
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| | | "lambda_l2": lambda_l2,
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| | |
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| | | 'is_unbalance': 'true',
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| | | # 'scale_pos_weight': scale_pos_weight, # is_unbalance must be false
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| | |
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| | | 'boosting_type': 'gbdt', # dart (slow but best, worse than gbdt), goss, gbdt
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| | |
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| | | 'objective': objective, # binary cross_entropy cross_entropy_lambda
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| | |
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| | | 'metric': {'cross_entropy'}, # auc auc_mu map (mean_average_precision) cross_entropy binary_logloss cross_entropy_lambda binary_error
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| | |
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| | | 'verbose': 0,
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| | | }
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| | |
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| | | model = lgbm.train(
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| | | lgbm_params,
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| | | train_set=lgbm.Dataset(X_train, y_train),
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| | | num_boost_round=num_boost_round,
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| | | #valid_sets=[lgbm.Dataset(X_validate, y_validate)],
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| | | #early_stopping_rounds=int(num_boost_round / 5),
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2023-08-12 19:35:21 +02:00 | | | #verbose_eval=100,
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2022-03-20 10:09:33 +01:00 | | | )
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| | |
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| | | return (model, scaler)
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| | |
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| | |
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2022-04-15 15:27:30 +02:00 | | | def predict_gb(models: tuple, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Use the model(s) to make predictions for the test data.
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| | | The first model is a prediction model and the second model (optional) is a scaler.
|
| | | """
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2022-04-15 15:27:30 +02:00 | | | #
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| | | # Double column set if required
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| | | #
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| | | shifts = model_config.get("train", {}).get("shifts", None)
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| | | if shifts:
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| | | df_X_test = double_columns(df_X_test, shifts)
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| | |
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| | | #
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| | | # Scale
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| | | #
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2022-03-20 10:09:33 +01:00 | | | scaler = models[1]
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| | | is_scale = scaler is not None
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| | |
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| | | input_index = df_X_test.index
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| | | if is_scale:
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| | | df_X_test = scaler.transform(df_X_test)
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| | | df_X_test = pd.DataFrame(data=df_X_test, index=input_index)
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| | | else:
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| | | df_X_test = df_X_test
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| | |
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2022-04-13 16:34:38 +02:00 | | | df_X_test_nonans = df_X_test.dropna() # Drop nans, possibly create gaps in index
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2022-03-20 10:09:33 +01:00 | | | nonans_index = df_X_test_nonans.index
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| | |
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| | | y_test_hat_nonans = models[0].predict(df_X_test_nonans.values)
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| | | y_test_hat_nonans = pd.Series(data=y_test_hat_nonans, index=nonans_index) # Attach indexes with gaps
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| | |
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| | | df_ret = pd.DataFrame(index=input_index) # Create empty dataframe with original index
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| | | df_ret["y_hat"] = y_test_hat_nonans # Join using indexes
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| | | sr_ret = df_ret["y_hat"] # This series has all original input indexes but NaNs where input is NaN
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| | |
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| | | return sr_ret
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| | |
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| | |
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| | | #
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| | | # NN
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| | | #
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_predict_nn(df_X, df_y, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return its predictions for the test data.
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| | | """
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2022-04-15 15:27:30 +02:00 | | | model_pair = train_nn(df_X, df_y, model_config)
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| | | y_test_hat = predict_nn(model_pair, df_X_test, model_config)
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2022-03-20 10:09:33 +01:00 | | | return y_test_hat
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| | |
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_nn(df_X, df_y, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return this model (and scaler if any).
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| | | """
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2022-04-13 16:34:38 +02:00 | | | #
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| | | # Double column set if required
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| | | #
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2022-04-15 15:27:30 +02:00 | | | shifts = model_config.get("train", {}).get("shifts", None)
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2022-04-13 16:34:38 +02:00 | | | if shifts:
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| | | max_shift = max(shifts)
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| | | df_X = double_columns(df_X, shifts)
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| | | df_X = df_X.iloc[max_shift:]
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| | | df_y = df_y.iloc[max_shift:]
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2022-03-20 10:09:33 +01:00 | | |
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| | | #
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2022-04-13 16:34:38 +02:00 | | | # Scale
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2022-03-20 10:09:33 +01:00 | | | #
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2022-04-15 15:27:30 +02:00 | | | is_scale = model_config.get("train", {}).get("is_scale", True)
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2022-03-20 10:09:33 +01:00 | | | if is_scale:
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| | | scaler = StandardScaler()
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| | | scaler.fit(df_X)
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| | | X_train = scaler.transform(df_X)
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| | | else:
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| | | scaler = None
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| | | X_train = df_X.values
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| | |
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| | | y_train = df_y.values
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| | |
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| | | #
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| | | # Create model
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| | | #
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2022-04-15 15:27:30 +02:00 | | | params = model_config.get("params")
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| | |
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2022-03-20 10:09:33 +01:00 | | | n_features = X_train.shape[1]
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| | | layers = params.get("layers") # List of ints
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| | | learning_rate = params.get("learning_rate")
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| | | n_epochs = params.get("n_epochs")
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| | | batch_size = params.get("bs")
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| | |
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| | | # Topology
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| | | model = Sequential()
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| | | # sigmoid, relu, tanh, selu, elu, exponential
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| | | # kernel_regularizer=l2(0.001)
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| | |
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| | | reg_l2 = 0.001
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| | |
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2022-07-24 11:06:33 +02:00 | | | model.add(Dense(n_features // 4, activation='sigmoid', input_dim=n_features)) # , kernel_regularizer=l2(reg_l2)
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2022-06-26 17:32:41 +02:00 | | | #model.add(Dropout(rate=0.5))
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2022-07-23 09:12:34 +02:00 | | | #model.add(Dense(n_features // 4, activation='sigmoid'))
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2022-03-20 10:09:33 +01:00 | | |
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| | | #model.add(Dense(layers[0], activation='sigmoid', input_dim=n_features, kernel_regularizer=l2(reg_l2)))
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| | | #if len(layers) > 1:
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| | | # model.add(Dense(layers[1], activation='sigmoid', kernel_regularizer=l2(reg_l2)))
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| | | #if len(layers) > 2:
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| | | # model.add(Dense(layers[2], activation='sigmoid', kernel_regularizer=l2(reg_l2)))
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| | |
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2022-06-26 17:32:41 +02:00 | | | model.add(Dense(1, activation='sigmoid'))
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2022-03-20 10:09:33 +01:00 | | |
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| | | # Compile model
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2022-03-25 22:48:23 +01:00 | | | optimizer = Adam(learning_rate=learning_rate)
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2022-03-20 10:09:33 +01:00 | | | model.compile(
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| | | loss='binary_crossentropy',
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| | | optimizer=optimizer,
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| | | metrics=[
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| | | tf.keras.metrics.AUC(name="auc"),
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| | | tf.keras.metrics.Precision(name="precision"),
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| | | tf.keras.metrics.Recall(name="recall"),
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| | | ],
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| | | )
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2022-06-26 17:32:41 +02:00 | | | #model.summary()
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2022-03-20 10:09:33 +01:00 | | |
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| | | es = EarlyStopping(
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| | | monitor="loss", # val_loss loss
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2022-04-10 19:38:53 +02:00 | | | min_delta=0.001, # Minimum change qualified as improvement
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| | | patience=1, # Number of epochs with no improvements
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2022-03-20 10:09:33 +01:00 | | | verbose=0,
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| | | mode='auto',
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| | | )
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| | |
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| | | #
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| | | # Train
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| | | #
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| | | model.fit(
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| | | X_train,
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| | | y_train,
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| | | batch_size=batch_size,
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| | | epochs=n_epochs,
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2022-04-10 19:38:53 +02:00 | | | #validation_split=0.05,
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2022-03-20 10:09:33 +01:00 | | | #validation_data=(X_validate, y_validate),
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| | | #class_weight={0: 1, 1: 20},
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| | | callbacks=[es],
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2022-04-10 19:38:53 +02:00 | | | verbose=1,
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2022-03-20 10:09:33 +01:00 | | | )
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| | |
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| | | return (model, scaler)
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| | |
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| | |
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2022-04-15 15:27:30 +02:00 | | | def predict_nn(models: tuple, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Use the model(s) to make predictions for the test data.
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| | | The first model is a prediction model and the second model (optional) is a scaler.
|
| | | """
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2022-04-13 16:34:38 +02:00 | | | #
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| | | # Double column set if required
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| | | #
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2022-04-15 15:27:30 +02:00 | | | shifts = model_config.get("train", {}).get("shifts", None)
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2022-04-13 16:34:38 +02:00 | | | if shifts:
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| | | df_X_test = double_columns(df_X_test, shifts)
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| | |
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| | | #
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| | | # Scale
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| | | #
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2022-03-20 10:09:33 +01:00 | | | scaler = models[1]
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| | | is_scale = scaler is not None
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| | |
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| | | input_index = df_X_test.index
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| | | if is_scale:
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| | | df_X_test = scaler.transform(df_X_test)
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| | | df_X_test = pd.DataFrame(data=df_X_test, index=input_index)
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| | | else:
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| | | df_X_test = df_X_test
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| | |
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2022-04-13 16:34:38 +02:00 | | | df_X_test_nonans = df_X_test.dropna() # Drop nans, possibly create gaps in index
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2022-03-20 10:09:33 +01:00 | | | nonans_index = df_X_test_nonans.index
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| | |
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2023-05-14 14:13:53 +02:00 | | | # Resets all (global) state generated by Keras
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| | | # Important if prediction is executed in a loop to avoid memory leak
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| | | tf.keras.backend.clear_session()
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| | |
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| | | y_test_hat_nonans = models[0].predict_on_batch(df_X_test_nonans.values) # NN returns matrix with one column as prediction
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2022-03-20 10:09:33 +01:00 | | | y_test_hat_nonans = y_test_hat_nonans[:, 0] # Or y_test_hat.flatten()
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| | | y_test_hat_nonans = pd.Series(data=y_test_hat_nonans, index=nonans_index) # Attach indexes with gaps
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| | |
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| | | df_ret = pd.DataFrame(index=input_index) # Create empty dataframe with original index
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| | | df_ret["y_hat"] = y_test_hat_nonans # Join using indexes
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| | | sr_ret = df_ret["y_hat"] # This series has all original input indexes but NaNs where input is NaN
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| | |
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| | | return sr_ret
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| | |
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| | |
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| | | #
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| | | # LC - Linear Classifier
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| | | #
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_predict_lc(df_X, df_y, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return its predictions for the test data.
|
| | | """
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2022-04-15 15:27:30 +02:00 | | | model_pair = train_lc(df_X, df_y, model_config)
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| | | y_test_hat = predict_lc(model_pair, df_X_test, model_config)
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2022-03-20 10:09:33 +01:00 | | | return y_test_hat
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| | |
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| | |
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2022-04-15 15:27:30 +02:00 | | | def train_lc(df_X, df_y, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return this model (and scaler if any).
|
| | | """
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2022-04-13 16:34:38 +02:00 | | | #
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| | | # Double column set if required
|
| | | #
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2022-04-15 15:27:30 +02:00 | | | shifts = model_config.get("train", {}).get("shifts", None)
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2022-04-13 16:34:38 +02:00 | | | if shifts:
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| | | max_shift = max(shifts)
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| | | df_X = double_columns(df_X, shifts)
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| | | df_X = df_X.iloc[max_shift:]
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| | | df_y = df_y.iloc[max_shift:]
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2022-03-20 10:09:33 +01:00 | | |
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| | | #
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2022-04-13 16:34:38 +02:00 | | | # Scale
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2022-03-20 10:09:33 +01:00 | | | #
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2022-04-15 15:27:30 +02:00 | | | is_scale = model_config.get("train", {}).get("is_scale", True)
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2022-03-20 10:09:33 +01:00 | | | if is_scale:
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| | | scaler = StandardScaler()
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| | | scaler.fit(df_X)
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| | | X_train = scaler.transform(df_X)
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| | | else:
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| | | scaler = None
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| | | X_train = df_X.values
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| | |
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| | | y_train = df_y.values
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| | |
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| | | #
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| | | # Create model
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| | | #
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2022-08-05 20:24:42 +02:00 | | | args = model_config.get("params").copy()
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2022-04-10 19:38:53 +02:00 | | | args["n_jobs"] = -1
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| | | args["verbose"] = 1
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2022-03-20 10:09:33 +01:00 | | | model = LogisticRegression(**args)
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| | |
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| | | #
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| | | # Train
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| | | #
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| | | model.fit(X_train, y_train)
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| | |
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| | | return (model, scaler)
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| | |
|
| | |
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2022-04-15 15:27:30 +02:00 | | | def predict_lc(models: tuple, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
|
| | | Use the model(s) to make predictions for the test data.
|
| | | The first model is a prediction model and the second model (optional) is a scaler.
|
| | | """
|
2022-04-13 16:34:38 +02:00 | | | #
|
| | | # Double column set if required
|
| | | #
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2022-04-15 15:27:30 +02:00 | | | shifts = model_config.get("train", {}).get("shifts", None)
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2022-04-13 16:34:38 +02:00 | | | if shifts:
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| | | df_X_test = double_columns(df_X_test, shifts)
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| | |
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| | | #
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| | | # Scale
|
| | | #
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2022-03-20 10:09:33 +01:00 | | | scaler = models[1]
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| | | is_scale = scaler is not None
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| | |
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| | | input_index = df_X_test.index
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| | | if is_scale:
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| | | df_X_test = scaler.transform(df_X_test)
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| | | df_X_test = pd.DataFrame(data=df_X_test, index=input_index)
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| | | else:
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| | | df_X_test = df_X_test
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| | |
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2022-04-13 16:34:38 +02:00 | | | df_X_test_nonans = df_X_test.dropna() # Drop nans, possibly create gaps in index
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2022-03-20 10:09:33 +01:00 | | | nonans_index = df_X_test_nonans.index
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| | |
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| | | y_test_hat_nonans = models[0].predict_proba(df_X_test_nonans.values) # It returns pairs or probas for 0 and 1
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| | | y_test_hat_nonans = y_test_hat_nonans[:, 1] # Or y_test_hat.flatten()
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| | | y_test_hat_nonans = pd.Series(data=y_test_hat_nonans, index=nonans_index) # Attach indexes with gaps
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| | |
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| | | df_ret = pd.DataFrame(index=input_index) # Create empty dataframe with original index
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| | | df_ret["y_hat"] = y_test_hat_nonans # Join using indexes
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| | | sr_ret = df_ret["y_hat"] # This series has all original input indexes but NaNs where input is NaN
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| | |
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| | | return sr_ret
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| | |
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| | |
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| | | #
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| | | # SVC - SVN Classifier
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| | | #
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| | |
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2022-08-05 20:24:42 +02:00 | | | def train_predict_svc(df_X, df_y, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return its predictions for the test data.
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| | | """
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2022-08-05 20:24:42 +02:00 | | | model_pair = train_svc(df_X, df_y, model_config)
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| | | y_test_hat = predict_svc(model_pair, df_X_test, model_config)
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2022-03-20 10:09:33 +01:00 | | | return y_test_hat
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2022-08-05 20:24:42 +02:00 | | | def train_svc(df_X, df_y, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Train model with the specified hyper-parameters and return this model (and scaler if any).
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| | | """
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2022-08-05 20:24:42 +02:00 | | | is_scale = model_config.get("train", {}).get("is_scale", True)
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2022-03-20 10:09:33 +01:00 | | |
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| | | #
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| | | # Prepare data
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| | | #
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| | | if is_scale:
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| | | scaler = StandardScaler()
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| | | scaler.fit(df_X)
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| | | X_train = scaler.transform(df_X)
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| | | else:
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| | | scaler = None
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| | | X_train = df_X.values
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| | |
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| | | y_train = df_y.values
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| | |
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| | | #
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| | | # Create model
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| | | #
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2022-08-05 20:24:42 +02:00 | | | args = model_config.get("params").copy()
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| | | args['probability'] = True # Required if we are going to use predict_proba()
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2022-03-20 10:09:33 +01:00 | | | model = SVC(**args)
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| | |
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| | | #
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| | | # Train
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| | | #
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| | | model.fit(X_train, y_train)
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| | |
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| | | return (model, scaler)
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| | |
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2022-08-05 20:24:42 +02:00 | | | def predict_svc(models: tuple, df_X_test, model_config: dict):
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2022-03-20 10:09:33 +01:00 | | | """
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| | | Use the model(s) to make predictions for the test data.
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| | | The first model is a prediction model and the second model (optional) is a scaler.
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| | | """
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2022-08-05 20:24:42 +02:00 | | | #
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| | | # Double column set if required
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| | | #
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| | | shifts = model_config.get("train", {}).get("shifts", None)
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| | | if shifts:
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| | | df_X_test = double_columns(df_X_test, shifts)
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| | |
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| | | #
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| | | # Scale
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| | | #
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2022-03-20 10:09:33 +01:00 | | | scaler = models[1]
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| | | is_scale = scaler is not None
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| | |
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| | | input_index = df_X_test.index
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| | | if is_scale:
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| | | df_X_test = scaler.transform(df_X_test)
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| | | df_X_test = pd.DataFrame(data=df_X_test, index=input_index)
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| | | else:
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| | | df_X_test = df_X_test
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| | |
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2022-04-13 16:34:38 +02:00 | | | df_X_test_nonans = df_X_test.dropna() # Drop nans, possibly create gaps in index
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2022-03-20 10:09:33 +01:00 | | | nonans_index = df_X_test_nonans.index
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| | |
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| | | y_test_hat_nonans = models[0].predict_proba(df_X_test_nonans.values) # It returns pairs or probas for 0 and 1
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| | | y_test_hat_nonans = y_test_hat_nonans[:, 1] # Or y_test_hat.flatten()
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| | | y_test_hat_nonans = pd.Series(data=y_test_hat_nonans, index=nonans_index) # Attach indexes with gaps
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| | |
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| | | df_ret = pd.DataFrame(index=input_index) # Create empty dataframe with original index
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| | | df_ret["y_hat"] = y_test_hat_nonans # Join using indexes
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| | | sr_ret = df_ret["y_hat"] # This series has all original input indexes but NaNs where input is NaN
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| | |
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| | | return sr_ret
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| | |
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| | |
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| | | #
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| | | # Utils
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| | | #
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| | |
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| | | def compute_scores(y_true, y_hat):
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| | | """Compute several scores and return them as dict."""
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| | | y_true = y_true.astype(int)
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| | | y_hat_class = np.where(y_hat.values > 0.5, 1, 0)
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| | |
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| | | try:
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| | | auc = metrics.roc_auc_score(y_true, y_hat.fillna(value=0))
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| | | except ValueError:
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| | | auc = 0.0 # Only one class is present (if dataset is too small, e.g,. when debugging) or Nulls in predictions
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| | |
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| | | try:
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| | | ap = metrics.average_precision_score(y_true, y_hat.fillna(value=0))
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| | | except ValueError:
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| | | ap = 0.0 # Only one class is present (if dataset is too small, e.g,. when debugging) or Nulls in predictions
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| | |
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| | | f1 = metrics.f1_score(y_true, y_hat_class)
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| | | precision = metrics.precision_score(y_true, y_hat_class)
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| | | recall = metrics.recall_score(y_true, y_hat_class)
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| | |
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| | | scores = dict(
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| | | auc=auc,
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| | | ap=ap, # it summarizes precision-recall curve, should be equivalent to auc
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| | | f1=f1,
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| | | precision=precision,
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| | | recall=recall,
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| | | )
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| | |
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| | | return scores
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| | |
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2022-04-13 16:34:38 +02:00 | | | def double_columns(df, shifts: List[int]):
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| | | if not shifts:
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| | | return df
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| | | df_list = [df.shift(shift) for shift in shifts]
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| | | df_list.insert(0, df)
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| | | max_shift = max(shifts)
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| | |
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| | | # Shift and add same columns
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| | | df_out = pd.concat(df_list, axis=1) # keys=('A', 'B')
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| | |
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| | | return df_out
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| | |
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| | |
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2022-03-20 10:09:33 +01:00 | | | if __name__ == '__main__':
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| | | pass
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